sunduanchen / ScissorLinks
Scissor package
☆222Updated last year
Alternatives and similar repositories for Scissor
Users that are interested in Scissor are comparing it to the libraries listed below
Sorting:
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 4 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- ☆104Updated 4 years ago
- ☆235Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆204Updated 9 months ago
- Quantifying metabolism activity at the single-cell resolution☆136Updated 9 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆169Updated 3 weeks ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆158Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- reticulate-free single cell format conversion☆154Updated 5 months ago
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆181Updated last week
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 10 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆147Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆258Updated last week
- Some tools for plotting single-cell data☆170Updated 2 weeks ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆113Updated 8 months ago
- Gene set scoring for single-cell data☆150Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 8 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- ☆120Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆195Updated last week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆147Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆276Updated last week
- Methods to discover gene programs on single-cell data☆118Updated last month