Explore the cancer relevance of your gene list
☆55Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for oncoEnrichR
Users that are interested in oncoEnrichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Oct 22, 2026Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Oct 24, 2026Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last month
- Readme☆10Mar 15, 2020Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆50Apr 16, 2021Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆18Jan 15, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆44Sep 14, 2026Updated last month
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- FInding REliable Variants without ArTifacts☆21Nov 18, 2022Updated 3 years ago
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 2 weeks ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Oct 21, 2026Updated 2 weeks ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 5 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Detection of super-enhancers in cancer data☆22Apr 10, 2023Updated 3 years ago
- ☆15Sep 21, 2021Updated 5 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Oct 6, 2026Updated 3 weeks ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆151Sep 9, 2020Updated 6 years ago
- piano - An R/Bioconductor package for gene set analysis☆14Sep 13, 2022Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆24May 11, 2018Updated 8 years ago
- R package containing useful functions for mutational signature analysis☆91Updated this week
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆22Feb 14, 2024Updated 2 years ago
- An R package to plot interactive three-way differential expression analysis☆40Jan 14, 2026Updated 9 months ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago