KChen-lab / MEDALTLinks
Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
☆21Updated 2 years ago
Alternatives and similar repositories for MEDALT
Users that are interested in MEDALT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Ordering gene-expression and functional events in single-cell experiments☆28Updated last year
- ☆18Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- ☆28Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆24Updated 5 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 4 months ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- ☆50Updated 5 years ago
- ☆43Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆47Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆18Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- R package for Bioconductor submission☆37Updated 3 years ago