KChen-lab / MEDALTLinks
Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
☆21Updated 2 years ago
Alternatives and similar repositories for MEDALT
Users that are interested in MEDALT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ☆43Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- ☆47Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆18Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 8 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆27Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- SCDC☆45Updated 6 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- ☆48Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 5 months ago
- R package of CSOmap(developing☆13Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- scWGCNA☆61Updated 3 years ago