Alternatives and similar repositories for MEDALT

Users that are interested in MEDALT are comparing it to the libraries listed below

• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆24Updated last year
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated 2 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• parveendabas / GBMatlas
  ☆18Updated 3 years ago
• quadbio / primate_cerebral_organoids
  Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…
  ☆37Updated 4 years ago
• juliendelile / MouseSpinalCordAtlas
  Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…
  ☆23Updated 5 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 6 months ago
• veltenlab / rnamagnet
  ☆25Updated 2 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated last year
• molgenis / scRNA-seq
  ☆18Updated last year
• gxiaolab / scAllele
  ☆39Updated last month
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• humengying0907 / InstaPrism
  InstaPrism is an R package for fast implementation of BayesPrism
  ☆40Updated last year
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 3 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆34Updated 6 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago