Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
☆21Sep 8, 2023Updated 2 years ago
Alternatives and similar repositories for MEDALT
Users that are interested in MEDALT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆13Sep 15, 2023Updated 2 years ago
- ☆18Oct 4, 2022Updated 3 years ago
- ☆12Jan 8, 2026Updated 5 months ago
- ☆10Nov 30, 2024Updated last year
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 4 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Draw phylogenetic trees of tumor evolution☆86Jul 21, 2023Updated 2 years ago
- ☆13Nov 21, 2019Updated 6 years ago
- code and data for Liu, Schilling, et al Nat Med 2019☆18Aug 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- ☆90Apr 5, 2021Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 6 months ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Reproducing result from the paper☆34May 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- ☆18Jun 13, 2019Updated 7 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 9 months ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- ☆290Oct 13, 2025Updated 8 months ago