TiedemannLab / sciCNVLinks
Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
☆13Updated 4 years ago
Alternatives and similar repositories for sciCNV
Users that are interested in sciCNV are comparing it to the libraries listed below
Sorting:
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆61Updated 2 years ago
- ☆125Updated 3 years ago
- ☆50Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Mollecular Functional Portraits☆43Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 5 months ago
- Analysis for BICCN cross-species primary motor cortex project☆23Updated last year
- ☆49Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- ☆62Updated 6 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 3 months ago
- detecting spatial patterns of allele-specific expression☆10Updated last year
- ☆47Updated 3 years ago
- ☆57Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆126Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 2 months ago
- ☆14Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆79Updated 11 months ago
- Methods for decontamination of single cell data☆47Updated 7 months ago