TiedemannLab / sciCNVLinks
Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
☆13Updated 3 years ago
Alternatives and similar repositories for sciCNV
Users that are interested in sciCNV are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆67Updated 8 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- ☆49Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆13Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated this week
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆12Updated 3 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- ☆20Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- ☆62Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- Single Cell Analysis Operations☆13Updated 3 months ago