EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
☆239May 11, 2026Updated last week
Alternatives and similar repositories for ecotyper
Users that are interested in ecotyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆113Sep 16, 2020Updated 5 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆289Updated this week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆539May 14, 2026Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆63Dec 27, 2023Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆235Apr 3, 2026Updated last month
- Scissor package☆263May 10, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆646Nov 12, 2025Updated 6 months ago
- Quantifying metabolism activity at the single-cell resolution☆178Feb 18, 2026Updated 3 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆143Feb 20, 2025Updated last year
- Methods to discover gene programs on single-cell data☆184Apr 1, 2026Updated last month
- ☆130Mar 27, 2022Updated 4 years ago
- Codes for the scPLC project☆75Dec 2, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package for Pathway RespOnsive GENe activity inference☆124Jan 30, 2023Updated 3 years ago
- Unified access to several second-generation deconvolution methods☆101Apr 6, 2026Updated last month
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Spatial Cellular Estimator for Tumors☆63May 5, 2026Updated 2 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆438Apr 11, 2026Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 4 months ago
- Multi-subject Single Cell Deconvolution☆296Mar 4, 2024Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆73Oct 16, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆136Mar 22, 2023Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 2 months ago
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆240Aug 7, 2024Updated last year
- SCDC☆46Jun 20, 2025Updated 11 months ago
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated last week
- Benchmarking analysis of data integration tools☆415Apr 27, 2026Updated 3 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆666Nov 14, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- A tool for semi-automatic cell type classification☆476Updated this week
- ☆22Mar 6, 2023Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆247May 14, 2026Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆295Dec 16, 2025Updated 5 months ago
- ☆284Oct 13, 2025Updated 7 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆147Jul 19, 2021Updated 4 years ago