digitalcytometry / ecotyperLinks
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
☆206Updated last year
Alternatives and similar repositories for ecotyper
Users that are interested in ecotyper are comparing it to the libraries listed below
Sorting:
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- Scissor package☆226Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- reticulate-free single cell format conversion☆178Updated last week
- Cell types enrichment analysis☆198Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆212Updated 11 months ago
- ☆247Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆157Updated 4 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆231Updated 6 months ago
- ☆173Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- ☆123Updated last year
- Interpretation of cell states using reference single-cell maps☆284Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆169Updated last year
- Methods for detecting doublets in single-cell sequencing data☆203Updated 2 weeks ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆156Updated last week
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆85Updated 4 months ago
- Conversion between scRNA-seq objects☆180Updated last month
- Convert Seurat objects to 10x Genomics Loupe files.☆132Updated 3 weeks ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆138Updated this week
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 5 months ago