EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
☆246May 11, 2026Updated 3 months ago
Alternatives and similar repositories for ecotyper
Users that are interested in ecotyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆113Sep 16, 2020Updated 5 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆548Aug 3, 2026Updated last week
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆294Jul 23, 2026Updated 2 weeks ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆63Dec 27, 2023Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆245Apr 3, 2026Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆670Jun 1, 2026Updated 2 months ago
- Scissor package☆271May 10, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Methods to discover gene programs on single-cell data☆205Jul 21, 2026Updated 3 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- ☆133Mar 27, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Unified access to several second-generation deconvolution methods☆110Aug 3, 2026Updated last week
- R package for Pathway RespOnsive GENe activity inference☆127Jan 30, 2023Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆190Feb 18, 2026Updated 5 months ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Spatial Cellular Estimator for Tumors☆65Jul 30, 2026Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆463Apr 11, 2026Updated 4 months ago
- Multi-subject Single Cell Deconvolution☆306Mar 4, 2024Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆139Mar 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCDC☆48Jun 20, 2025Updated last year
- ☆22Mar 6, 2023Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆66Feb 8, 2026Updated 6 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- ☆60Aug 8, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆680Nov 14, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 6 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆149Jul 19, 2021Updated 5 years ago
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago