kieranrcampbell / clonealignLinks
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
☆36Updated 5 years ago
Alternatives and similar repositories for clonealign
Users that are interested in clonealign are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- ☆28Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Fast motif matching in R☆46Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- ☆34Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆44Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ☆59Updated last year
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- ☆23Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year