XSLiuLab / tumor-immunogenicity-score
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
☆31Updated 3 years ago
Alternatives and similar repositories for tumor-immunogenicity-score:
Users that are interested in tumor-immunogenicity-score are comparing it to the libraries listed below
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆29Updated 6 years ago
- Calculating Tumor microenvironment score☆28Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆40Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- ☆13Updated 7 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆29Updated 6 months ago
- Pseudotime Analysis for Bulk Data☆14Updated 5 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Network analysis for multi-omics☆13Updated 2 weeks ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- ☆9Updated 7 years ago
- R package for tissue-specific gene enrichment☆12Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 6 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ☆10Updated 5 years ago
- R package☆21Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆23Updated 6 months ago