jyyulab / NetBIDLinks
Data-driven Network-based Bayesian Inference of Drivers
☆43Updated 2 weeks ago
Alternatives and similar repositories for NetBID
Users that are interested in NetBID are comparing it to the libraries listed below
Sorting:
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆29Updated 7 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 7 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- ☆41Updated 4 years ago
- ☆40Updated 7 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- ☆47Updated 5 years ago
- ☆30Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆42Updated 3 years ago
- ☆47Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 3 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆37Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆25Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago