jyyulab / NetBID
Data-driven Network-based Bayesian Inference of Drivers
☆41Updated 3 months ago
Alternatives and similar repositories for NetBID:
Users that are interested in NetBID are comparing it to the libraries listed below
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆28Updated 6 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆41Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- ☆39Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- ☆47Updated last year
- R package for Flexible dot plots☆29Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆50Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆36Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 weeks ago
- ☆37Updated 2 weeks ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 3 weeks ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆34Updated 4 years ago
- Identify and correct invalid gene symbols☆58Updated 4 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆48Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆36Updated 10 months ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- ☆46Updated 5 years ago