Alternatives and similar repositories for NetBID

Users that are interested in NetBID are comparing it to the libraries listed below

• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• dgrun / RaceID3_StemID2_package
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…
  ☆43Updated last year
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆45Updated 9 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated last year
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆44Updated 3 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated 2 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 3 weeks ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆49Updated 2 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆64Updated 4 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 2 weeks ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• zhouzilu / DENDRO
  Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
  ☆35Updated 5 years ago
• MahnoorNGondal / scRNA-seq-ICB-cohorts
  This repository contained single-cell RNA-seq datasets with ICB treated patients
  ☆13Updated last year
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated 7 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 6 years ago