Alternatives and similar repositories for cerebroApp

Users that are interested in cerebroApp are comparing it to the libraries listed below

• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 2 months ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆49Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆47Updated 3 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆48Updated last year
• bicciatolab / popsicleR
  popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…
  ☆23Updated 2 months ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 6 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆33Updated 2 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆45Updated 3 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆63Updated 5 months ago