wguo-research / scCancer
A package for automated processing of single cell RNA-seq data in cancer
☆105Updated 4 months ago
Alternatives and similar repositories for scCancer:
Users that are interested in scCancer are comparing it to the libraries listed below
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- Scissor package☆210Updated 10 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆121Updated 7 months ago
- ☆101Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆126Updated last month
- Methods to discover gene programs on single-cell data☆105Updated 2 weeks ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- Assessing the purity of single cell population☆122Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- ☆115Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- Gene set scoring for single-cell data☆144Updated 4 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆106Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆131Updated 7 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆113Updated 5 months ago
- Spatial transcriptomics of heart tissue☆81Updated last year
- ☆59Updated 5 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- reticulate-free single cell format conversion☆131Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆84Updated 5 months ago
- Create stacked violin plot☆46Updated 3 years ago
- Publication Page for MPAL Paper 2019☆80Updated 4 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆117Updated last year