mbourgey / EBI_cancer_workshop_CNV
hands-on for NGS/SNParray CNV call trainning
☆17Updated 2 years ago
Alternatives and similar repositories for EBI_cancer_workshop_CNV:
Users that are interested in EBI_cancer_workshop_CNV are comparing it to the libraries listed below
- EBI cancer workshop course materials☆20Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- ☆13Updated 7 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 weeks ago
- ☆15Updated 2 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆13Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 3 years ago
- DriverPower☆26Updated this week
- Filter and prioritize fusion calls☆20Updated 3 months ago
- ☆17Updated 6 years ago
- ATAC-seq lab for BIOINF525☆10Updated 8 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- RNA-seq workflow: differential transcript usage☆20Updated last year
- workshop website on readthedocs☆19Updated last month
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Summer school course materials collection☆25Updated 6 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Utility functions for FACETS☆34Updated 9 months ago