JEFworks-Lab / HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
☆98Updated 3 years ago
Alternatives and similar repositories for HoneyBADGER:
Users that are interested in HoneyBADGER are comparing it to the libraries listed below
- Tools for single-cell data processing☆122Updated 9 months ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 3 weeks ago
- chromatin Variability Across Regions (of the genome!)☆168Updated 7 months ago
- ☆61Updated last year
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆102Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 2 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆116Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆107Updated last month
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated 2 weeks ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆83Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆74Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆36Updated 5 years ago
- ☆53Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆105Updated last month
- Mouse cell atlas☆60Updated 4 years ago