JEFworks-Lab / HoneyBADGERLinks
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
☆97Updated 3 years ago
Alternatives and similar repositories for HoneyBADGER
Users that are interested in HoneyBADGER are comparing it to the libraries listed below
Sorting:
- Tools for single-cell data processing☆125Updated last year
- Clone of the Bioconductor repository for the scater package.☆96Updated 3 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated 2 weeks ago
- ☆55Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆58Updated last month
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆38Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆46Updated 3 years ago
- Mouse cell atlas☆60Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- ☆63Updated 4 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- chromatin Variability Across Regions (of the genome!)☆178Updated 11 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 2 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago