☆364Dec 9, 2021Updated 4 years ago
Alternatives and similar repositories for cellphonedb
Users that are interested in cellphonedb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆475Jun 6, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆656Jun 1, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Jun 5, 2026Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆614Jun 26, 2025Updated 11 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆486Apr 5, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆469Feb 20, 2026Updated 3 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆338Apr 23, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- R toolkit for single cell genomics☆2,746May 29, 2026Updated 2 weeks ago
- ☆454May 26, 2026Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆331Nov 1, 2022Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆400May 6, 2026Updated last month
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,489Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆338Jul 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 3 weeks ago
- ☆67Aug 2, 2019Updated 6 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆265Jan 10, 2026Updated 5 months ago
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Metacell - Single-cell mRNA Analysis☆121Mar 16, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 5 months ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,748Jun 6, 2026Updated last week
- ☆47Jul 24, 2025Updated 10 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 11 months ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago