gustaveroussy / EaCoNLinks
Easy Copy Number !
☆21Updated 3 years ago
Alternatives and similar repositories for EaCoN
Users that are interested in EaCoN are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 4 months ago
- Git repo for CONIPHER tree building☆21Updated 3 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- ☆14Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆40Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- ☆35Updated 5 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆10Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- Implementation of FACETS for Terra☆12Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 3 years ago