gustaveroussy / EaCoNLinks
Easy Copy Number !
☆21Updated 3 months ago
Alternatives and similar repositories for EaCoN
Users that are interested in EaCoN are comparing it to the libraries listed below
Sorting:
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 3 months ago
- DriverPower☆26Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Utility functions for FACETS☆39Updated last month
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆11Updated 2 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago