broadinstitute / infercnvLinks
Inferring CNV from Single-Cell RNA-Seq
☆648Updated 2 months ago
Alternatives and similar repositories for infercnv
Users that are interested in infercnv are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆517Updated 9 months ago
- NicheNet: predict active ligand-target links between interacting cells☆601Updated 2 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆442Updated 10 months ago
- ☆430Updated last week
- R toolkit for the analysis of single-cell chromatin data☆400Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆613Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆521Updated 3 months ago
- Community-provided extensions to Seurat☆353Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆513Updated last week
- ☆641Updated this week
- A toolkit for single-cell immune profiling☆359Updated last week
- ☆358Updated 4 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆488Updated 7 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆475Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆316Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆422Updated 3 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆616Updated 3 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆336Updated this week
- A package to help convert different single-cell data formats to each other☆451Updated last year
- ☆598Updated 4 years ago
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆460Updated last week
- Differential expression of RNA-seq data using the Negative Binomial☆437Updated last month
- 10x Genomics Single Cell Analysis☆440Updated last month
- ENCODE ATAC-seq pipeline☆443Updated last year
- Useful functions to make your scRNA-seq plot more cool!☆371Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆756Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- ☆407Updated 4 years ago
- A list of scRNA-seq analysis tools☆770Updated last week