Inferring CNV from Single-Cell RNA-Seq
☆686Oct 31, 2026Updated this week
Alternatives and similar repositories for infercnv
Users that are interested in infercnv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆315Jun 16, 2026Updated 4 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆674Oct 15, 2026Updated 3 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆201Updated this week
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆233Feb 4, 2026Updated 9 months ago
- NicheNet: predict active ligand-target links between interacting cells☆685Updated this week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆103Dec 8, 2022Updated 3 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆648Jun 26, 2025Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆484Apr 11, 2026Updated 6 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆363Dec 9, 2021Updated 4 years ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 8 months ago
- ☆92Apr 5, 2021Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆346Nov 1, 2022Updated 4 years ago
- R toolkit for single cell genomics☆2,812Oct 28, 2026Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆557Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆691Mar 4, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆104Jul 19, 2021Updated 5 years ago
- Interpretation of cell states using reference single-cell maps☆330Dec 19, 2025Updated 10 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆129Mar 19, 2026Updated 7 months ago
- Scissor package☆280May 10, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆208Mar 9, 2024Updated 2 years ago
- ☆469Sep 22, 2026Updated last month
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆142Sep 6, 2024Updated 2 years ago
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RNA Velocity generalized through dynamical modeling☆515Feb 25, 2026Updated 8 months ago
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated 3 weeks ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆492Jun 6, 2025Updated last year
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,889Updated this week
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆277Oct 18, 2026Updated 2 weeks ago