broadinstitute / infercnvLinks
Inferring CNV from Single-Cell RNA-Seq
☆632Updated 6 months ago
Alternatives and similar repositories for infercnv
Users that are interested in infercnv are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆485Updated 5 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆430Updated 6 months ago
- ☆401Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆559Updated last month
- Community-provided extensions to Seurat☆342Updated 9 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆544Updated last year
- R toolkit for the analysis of single-cell chromatin data☆385Updated this week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆499Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆595Updated 9 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆445Updated last month
- ☆356Updated 3 years ago
- ☆616Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆418Updated last month
- Collections of library structure and sequence of popular single cell genomic methods☆474Updated 3 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆301Updated 5 years ago
- A toolkit for single-cell immune profiling☆345Updated last week
- 10x Genomics Single Cell Analysis☆426Updated 6 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆464Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆329Updated this week
- Differential expression of RNA-seq data using the Negative Binomial☆407Updated this week
- A package to help convert different single-cell data formats to each other☆435Updated last year
- High dimensional weighted gene co-expression network analysis☆430Updated last month
- A list of scRNA-seq analysis tools☆725Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆531Updated last month
- Intro to ChIPseq using HPC☆310Updated 2 years ago
- ☆574Updated 4 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- ☆289Updated 3 years ago
- Useful functions to make your scRNA-seq plot more cool!☆352Updated 3 months ago
- ENCODE ATAC-seq pipeline☆427Updated last year