Inferring CNV from Single-Cell RNA-Seq
☆686Nov 14, 2025Updated 11 months ago
Alternatives and similar repositories for infercnv
Users that are interested in infercnv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆308Jun 16, 2026Updated 4 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆572Mar 21, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆675Jun 5, 2026Updated 4 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆497Apr 5, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NicheNet: predict active ligand-target links between interacting cells☆682Sep 25, 2026Updated 3 weeks ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆346Nov 1, 2022Updated 3 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆104Jul 19, 2021Updated 5 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆199Updated this week
- ☆363Dec 9, 2021Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆232Feb 4, 2026Updated 8 months ago
- R toolkit for single cell genomics☆2,805Oct 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆92Apr 5, 2021Updated 5 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆644Jun 26, 2025Updated last year
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆478Apr 11, 2026Updated 6 months ago
- Interpretation of cell states using reference single-cell maps☆327Dec 19, 2025Updated 9 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆215Oct 20, 2025Updated 11 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated last week
- A toolkit for single-cell immune profiling☆377Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆490Jun 6, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆348Jul 28, 2020Updated 6 years ago
- ☆121Sep 5, 2023Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆489Jan 22, 2026Updated 8 months ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,877Updated this week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆126Mar 19, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆682Mar 4, 2026Updated 7 months ago
- Scissor package☆277May 10, 2024Updated 2 years ago
- RNA Velocity generalized through dynamical modeling☆513Feb 25, 2026Updated 7 months ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 4 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆297Jul 23, 2026Updated 2 months ago
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- Single-Cell Genotyping Tool☆218Updated this week