Alternatives and similar repositories for Seurat-to-RNA-Velocity

Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below

• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆148Updated 3 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• neurorestore / Libra
  ☆177Updated 5 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆113Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆136Updated 3 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• huayc09 / SeuratExtend
  ☆179Updated last month
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆134Updated 11 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆171Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆233Updated 2 years ago
• navinlabcode / copykat
  ☆256Updated 2 weeks ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆96Updated 4 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆107Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆210Updated 2 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆296Updated 2 years ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆174Updated 6 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆143Updated 4 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆166Updated 3 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 5 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆151Updated 4 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago
• JiekaiLab / scTE
  ☆111Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 6 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆189Updated 11 months ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆188Updated this week