A guide to using a Seurat object in conjunction with RNA Velocity
☆142Dec 25, 2021Updated 4 years ago
Alternatives and similar repositories for Seurat-to-RNA-Velocity
Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA Velocity generalized through dynamical modeling☆505Feb 25, 2026Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302May 11, 2026Updated last month
- Easy single cell analysis platform for enrichment☆226Apr 3, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 4 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆660Jun 1, 2026Updated 2 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆300Jun 17, 2025Updated last year
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆454Jun 9, 2026Updated last week
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆82Mar 1, 2026Updated 3 months ago
- R package for semi-supervised single-cell data integration☆99Jan 27, 2026Updated 4 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 3 weeks ago
- ☆36Nov 29, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methods to discover gene programs on single-cell data☆192Jun 5, 2026Updated 2 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆435May 11, 2026Updated last month
- Scissor package☆266May 10, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- Single Cell Analysis of Five'Ends☆52Mar 19, 2024Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆142Mar 13, 2026Updated 3 months ago
- ☆304Nov 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆447Apr 11, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆658Jun 5, 2026Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆339Jul 28, 2020Updated 5 years ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 7 months ago
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 2 years ago
- Create stacked violin plot☆51Mar 2, 2022Updated 4 years ago