Alternatives and similar repositories for Seurat-to-RNA-Velocity

Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below

• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆153Updated 3 years ago
• neurorestore / Libra
  ☆181Updated 8 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆142Updated 6 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆216Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆201Updated last week
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆179Updated 5 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆177Updated 2 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆123Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆121Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆182Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆237Updated 2 years ago
• huayc09 / SeuratExtend
  ☆199Updated last month
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• navinlabcode / copykat
  ☆263Updated 3 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆192Updated 2 months ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆154Updated 5 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆169Updated 3 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆143Updated last year
• JiekaiLab / scTE
  ☆114Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆214Updated 3 weeks ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆96Updated 4 years ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆150Updated 6 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆133Updated last year
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆114Updated 8 months ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 7 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆197Updated this week
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆132Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆307Updated 3 years ago