Alternatives and similar repositories for Seurat-to-RNA-Velocity:

Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below

• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆266Updated 2 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• neurorestore / Libra
  ☆163Updated 6 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆151Updated 2 years ago
• navinlabcode / copykat
  ☆226Updated 8 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆192Updated 5 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆91Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆122Updated 10 months ago
• JiekaiLab / scTE
  ☆104Updated 10 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated 2 months ago
• tallulandrews / scRNASeqPipeline
  ☆118Updated 6 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆244Updated this week
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆92Updated 3 years ago
• huayc09 / SeuratExtend
  ☆125Updated 2 weeks ago
• sunduanchen / Scissor
  Scissor package
  ☆208Updated 10 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 4 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆184Updated 3 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆174Updated 3 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆130Updated 3 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆169Updated 8 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆132Updated 7 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆197Updated 11 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 9 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• IanevskiAleksandr / sc-type
  ☆255Updated 4 months ago