basilkhuder / Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity
☆136Updated 3 years ago
Alternatives and similar repositories for Seurat-to-RNA-Velocity:
Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆163Updated 6 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- ☆226Updated 8 months ago
- A tool for detecting somatic variants in single cell data☆192Updated 5 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- my notes for scATACseq analysis☆122Updated 10 months ago
- ☆104Updated 10 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- ☆118Updated 6 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆244Updated this week
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆92Updated 3 years ago
- ☆125Updated 2 weeks ago
- Scissor package☆208Updated 10 months ago
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 4 months ago
- Clone of the Bioconductor repository for the SingleR package.☆184Updated 3 weeks ago
- Clustering scRNAseq by genotypes☆174Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- Gene set scoring for single-cell data☆143Updated 4 months ago
- reticulate-free single cell format conversion☆130Updated 3 months ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Quantifying metabolism activity at the single-cell resolution☆132Updated 7 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- Cell types enrichment analysis☆194Updated 9 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- ☆255Updated 4 months ago