Alternatives and similar repositories for Seurat-to-RNA-Velocity

Users that are interested in Seurat-to-RNA-Velocity are comparing it to the libraries listed below

• neurorestore / Libra
  ☆174Updated 4 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆146Updated 3 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆118Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆184Updated last month
• navinlabcode / copykat
  ☆251Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆212Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆167Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 10 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆159Updated last month
• huayc09 / SeuratExtend
  ☆171Updated last week
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆291Updated 2 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆166Updated 2 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆112Updated 2 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆208Updated last month
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆131Updated 2 months ago
• JiekaiLab / scTE
  ☆110Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆162Updated 4 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆124Updated 4 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆132Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆189Updated 10 months ago
• kharchenkolab / numbat
  Haplotype-aware CNV analysis from single-cell RNA-seq
  ☆190Updated last month
• rpolicastro / scProportionTest
  ☆71Updated 2 years ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆95Updated 4 years ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆188Updated 10 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆184Updated 3 weeks ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆103Updated last year
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆124Updated 10 months ago