arosenfeld / immunedbLinks
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
☆21Updated last year
Alternatives and similar repositories for immunedb
Users that are interested in immunedb are comparing it to the libraries listed below
Sorting:
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R package for nucleotide conversion sequencing data analysis☆15Updated 6 months ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆18Updated last month
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆18Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- ☆12Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆15Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 3 months ago
- ☆15Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 4 months ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 4 years ago
- ☆17Updated last year
- ☆16Updated last year