ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
☆23May 21, 2024Updated 2 years ago
Alternatives and similar repositories for immunedb
Users that are interested in immunedb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 8 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆75May 11, 2026Updated 2 weeks ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- ☆90Apr 5, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated last month
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- AIRR Community Data Standards☆41Updated this week
- ☆13Apr 16, 2021Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆45Mar 13, 2026Updated 2 months ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- a tool for summarizing and integrating gene-set analysis results☆16Aug 14, 2024Updated last year
- ☆10May 20, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Dec 17, 2019Updated 6 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆240Feb 12, 2026Updated 3 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- R Package - Dynamical Systems Approach to Immune Response Modeling☆34Jul 19, 2024Updated last year
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10May 8, 2026Updated 2 weeks ago
- ☆10Dec 4, 2021Updated 4 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets☆34May 20, 2022Updated 4 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆20Nov 22, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Feb 26, 2026Updated 3 months ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Sep 19, 2025Updated 8 months ago
- Tools for working with BUS files☆102May 27, 2025Updated 11 months ago