arosenfeld / immunedbLinks
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
☆21Updated last year
Alternatives and similar repositories for immunedb
Users that are interested in immunedb are comparing it to the libraries listed below
Sorting:
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆16Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆14Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- simplified cellranger for long-read data☆19Updated last month
- Summary statistics for repertoires☆17Updated 2 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 6 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- ☆20Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Code to run OncoSig Analyses☆18Updated 5 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago