Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
☆74Updated 2 years ago
Alternatives and similar repositories for CONICS:
Users that are interested in CONICS are comparing it to the libraries listed below
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- scWGCNA☆58Updated 2 years ago
- ☆45Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆32Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆53Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆16Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆39Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- ☆59Updated 7 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated 3 weeks ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- simpler single cell RNAseq data clustering☆40Updated last month
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 3 months ago
- ☆18Updated last year