omnideconv / immunedeconvLinks
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
☆500Updated last week
Alternatives and similar repositories for immunedeconv
Users that are interested in immunedeconv are comparing it to the libraries listed below
Sorting:
- NicheNet: predict active ligand-target links between interacting cells☆561Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆491Updated 5 months ago
- A toolkit for single-cell immune profiling☆345Updated this week
- Community-provided extensions to Seurat☆344Updated 9 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆295Updated last month
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 6 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- Inferring CNV from Single-Cell RNA-Seq☆635Updated 7 months ago
- ☆404Updated 2 months ago
- High dimensional weighted gene co-expression network analysis☆433Updated last week
- A package to help convert different single-cell data formats to each other☆438Updated last year
- ☆357Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆598Updated 10 months ago
- ☆275Updated 10 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆330Updated this week
- R toolkit for the analysis of single-cell chromatin data☆388Updated last week
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆466Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆556Updated last year
- Single cell RNA sequencing analysis course☆221Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆456Updated 2 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆394Updated last week
- T/B cell receptor sequencing analysis notes☆263Updated 9 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆291Updated 2 years ago
- Analysis of single cell RNA-seq data course☆146Updated 3 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆214Updated 6 months ago
- tools and notes for spatial omics☆313Updated 6 months ago
- ☆621Updated 5 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆323Updated this week