omnideconv / immunedeconvLinks
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
☆506Updated 2 weeks ago
Alternatives and similar repositories for immunedeconv
Users that are interested in immunedeconv are comparing it to the libraries listed below
Sorting:
- NicheNet: predict active ligand-target links between interacting cells☆578Updated last week
- Community-provided extensions to Seurat☆348Updated 11 months ago
- A toolkit for single-cell immune profiling☆353Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆501Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆297Updated last week
- ☆415Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆422Updated last month
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆306Updated 5 years ago
- A package to help convert different single-cell data formats to each other☆444Updated last year
- ☆360Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆438Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆646Updated 8 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- R toolkit for the analysis of single-cell chromatin data☆393Updated 2 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆433Updated 8 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆601Updated 2 weeks ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆467Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆483Updated 2 weeks ago
- ☆275Updated 11 months ago
- Single cell RNA sequencing analysis course☆224Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆398Updated last month
- Fast Gene Set Enrichment Analysis☆419Updated 3 weeks ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆571Updated last year
- ☆629Updated 6 months ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆233Updated last week
- T/B cell receptor sequencing analysis notes☆266Updated 10 months ago
- Analysis of single cell RNA-seq data course☆152Updated 3 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆256Updated 3 weeks ago
- tools and notes for spatial omics☆322Updated 8 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆225Updated 7 months ago