omnideconv / immunedeconvLinks
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
☆495Updated last month
Alternatives and similar repositories for immunedeconv
Users that are interested in immunedeconv are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆477Updated 3 months ago
- A toolkit for single-cell immune profiling☆336Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆509Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆298Updated 4 years ago
- R package for integrating and analyzing multiple single-cell datasets☆416Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆548Updated 2 weeks ago
- ☆355Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆288Updated this week
- Community-provided extensions to Seurat☆334Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆428Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- Inferring CNV from Single-Cell RNA-Seq☆620Updated 4 months ago
- ☆388Updated 2 weeks ago
- Single cell RNA sequencing analysis course☆215Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆420Updated 2 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆325Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆468Updated last month
- High dimensional weighted gene co-expression network analysis☆413Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆381Updated 2 weeks ago
- ☆268Updated 7 months ago
- tools and notes for spatial omics☆302Updated 3 months ago
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆456Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆246Updated last month
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆399Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆577Updated 7 months ago
- Analysis of single cell RNA-seq data course☆138Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆375Updated 5 months ago