Alternatives and similar repositories for SCATrEx:

Users that are interested in SCATrEx are comparing it to the libraries listed below

• caravagnalab / congas
  A set of Pyro models and functions to infer CNA from scRNA-seq data
  ☆11Updated last year
• cbg-ethz / BnpC
  Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
  ☆19Updated 9 months ago
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆21Updated 5 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated last month
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆13Updated 5 years ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆12Updated last month
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 7 months ago
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated last year
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 6 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• anna-neufeld / countsplit
  ☆21Updated last year
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated last year
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 2 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆25Updated 2 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• cbg-ethz / scIsoPrep
  Single-cell Iso Prep
  ☆15Updated last year
• almaan / eggplant
  ☆21Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• argschwind / TAPseq_manuscript
  Analysis code for the TAP-seq manuscript.
  ☆11Updated 3 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• gerstung-lab / tensorsignatures
  A python package for learning mutational signatures and their multidimensional genomic properties
  ☆14Updated 4 years ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆16Updated 9 months ago
• landau-lab / PATH
  ☆17Updated 7 months ago