cbg-ethz / SCATrExLinks
Map single-cell transcriptomes to copy number evolutionary trees.
☆14Updated last year
Alternatives and similar repositories for SCATrEx
Users that are interested in SCATrEx are comparing it to the libraries listed below
Sorting:
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Deep exponential families for single-cell data.☆20Updated last month
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆28Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- ☆21Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Fast algorithms for GLM-PCA.☆14Updated 8 months ago
- ☆23Updated 10 months ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Fit generalized linear models in python.☆28Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆12Updated 4 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- ☆29Updated 2 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Updated 5 years ago