cbg-ethz / SCATrEx
Map single-cell transcriptomes to copy number evolutionary trees.
☆13Updated last month
Related projects: ⓘ
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Updated last year
- Deep exponential families for single-cell data.☆20Updated 2 weeks ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆18Updated 2 months ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Single-cell Iso Prep☆11Updated 10 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last week
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- ☆26Updated last year
- A python package for chromVAR☆26Updated last year
- ☆20Updated 11 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆26Updated 3 weeks ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- High-definition modeling of chromatin + transcriptomics data☆17Updated last month
- Regulatory networks with Direct Information☆16Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆23Updated 2 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆12Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- Finding the causality in biological pathways☆10Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- ☆17Updated 4 months ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- ☆10Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- post-clustering differential expression test☆35Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆8Updated 3 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year