marrlab / CAR_T_TargetIdentificationLinks
Computational identification of targets for CAR-T cell therapy in AML
☆21Updated 3 years ago
Alternatives and similar repositories for CAR_T_TargetIdentification
Users that are interested in CAR_T_TargetIdentification are comparing it to the libraries listed below
Sorting:
- ☆25Updated 3 years ago
- ☆13Updated last month
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- ☆16Updated 4 years ago
- ☆21Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated last week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- ☆24Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 3 years ago
- ☆20Updated 2 years ago
- ☆12Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- ☆17Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Vaeda method for computational doublet annotation☆18Updated last week
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 9 months ago
- ☆38Updated 4 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago