Computational identification of targets for CAR-T cell therapy in AML
☆21Dec 25, 2022Updated 3 years ago
Alternatives and similar repositories for CAR_T_TargetIdentification
Users that are interested in CAR_T_TargetIdentification are comparing it to the libraries listed below
Sorting:
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- ☆12Apr 16, 2021Updated 4 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆14Jun 28, 2022Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆47Jun 3, 2024Updated last year
- ☆21Dec 23, 2024Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 4 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- ☆11May 26, 2023Updated 2 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆13Oct 27, 2023Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- ☆11May 24, 2024Updated last year
- A python interface for the CIViC db application☆11Feb 19, 2026Updated last week
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated last year
- ☆12Sep 29, 2023Updated 2 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆12Feb 11, 2021Updated 5 years ago
- ☆15Mar 15, 2023Updated 2 years ago
- ☆16Apr 18, 2025Updated 10 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Feb 26, 2020Updated 6 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 4 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆18Feb 13, 2023Updated 3 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago