Alternatives and similar repositories for CAR_T_TargetIdentification

Users that are interested in CAR_T_TargetIdentification are comparing it to the libraries listed below

• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆15Updated 3 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆23Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆14Updated 5 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 8 months ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• ChengLiLab / SCALE
  A tissue-specific single-cell biological age model
  ☆11Updated last year
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆15Updated last week
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆16Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 3 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆18Updated 4 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆16Updated 11 months ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last week
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆26Updated 6 months ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆11Updated 2 months ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week