arc85 / celltalker

Related projects ⓘ

Alternatives and complementary repositories for celltalker

• Coolgenome / iTALK
  ☆58Updated 5 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆59Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆33Updated 5 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆27Updated 3 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆48Updated 2 weeks ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆32Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆32Updated 4 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆36Updated 7 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆59Updated last year
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆53Updated 3 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆91Updated 11 months ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆34Updated 9 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• YutingPKU / SingleCell-Multiomics
  ☆59Updated 2 years ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆36Updated 2 months ago
• TheHumphreysLab / plot1cell
  ☆95Updated last year
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 6 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆26Updated last year
• califano-lab / single-cell-pipeline
  ☆42Updated 4 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆62Updated 3 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• MSZaki / Aging-and-CR-rat-atlas
  Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…
  ☆28Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆59Updated 4 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆82Updated 2 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆31Updated last year