Alternatives and similar repositories for celltalker

Users that are interested in celltalker are comparing it to the libraries listed below

• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆64Updated 4 years ago
• Coolgenome / iTALK
  ☆62Updated 6 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆42Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 2 weeks ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆109Updated 4 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 10 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 6 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆35Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆37Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated last month
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆121Updated last month
• rpolicastro / scProportionTest
  ☆71Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆88Updated last month
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆83Updated 2 years ago
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated 2 months ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆50Updated 3 years ago
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆71Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago