Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
☆30Jul 22, 2024Updated 2 years ago
Alternatives and similar repositories for STARCH
Users that are interested in STARCH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆51Aug 18, 2025Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 8 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆213Oct 20, 2025Updated 11 months ago
- ☆12May 16, 2023Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Spatial Cellular Estimator for Tumors☆66Sep 15, 2026Updated last week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆185Jan 8, 2026Updated 8 months ago
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆48Updated this week
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- ☆92Apr 5, 2021Updated 5 years ago
- ☆12May 24, 2024Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- ☆30Nov 21, 2019Updated 6 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆486Jan 22, 2026Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆104Feb 26, 2025Updated last year
- ☆308Jun 16, 2026Updated 3 months ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆230Feb 4, 2026Updated 7 months ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆60Aug 13, 2026Updated last month
- ☆27Apr 8, 2025Updated last year
- R package for Pathway RespOnsive GENe activity inference☆129Jan 30, 2023Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Spatial omics analysis toolbox☆389Updated this week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…