raphael-group / STARCHLinks
Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
☆28Updated last year
Alternatives and similar repositories for STARCH
Users that are interested in STARCH are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆83Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- CAST package☆40Updated last year
- ☆31Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆31Updated 3 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 4 months ago
- Spatial Cellular Estimator for Tumors☆58Updated last month
- ☆53Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- ☆31Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆40Updated 9 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 8 months ago
- Spatially resolved transcriptomic analysis☆61Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 10 months ago
- ☆30Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- ☆19Updated 6 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆37Updated 5 months ago