Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
☆30Jul 22, 2024Updated last year
Alternatives and similar repositories for STARCH
Users that are interested in STARCH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆48Aug 18, 2025Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆91Dec 8, 2022Updated 3 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Sep 8, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆204Oct 20, 2025Updated 5 months ago
- ☆11May 16, 2023Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆174Jan 8, 2026Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆62Mar 23, 2026Updated 2 weeks ago
- ☆11May 24, 2024Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- ☆87Apr 5, 2021Updated 5 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- Construct Tumor Transition Zone Microenvironment☆57Jun 25, 2025Updated 9 months ago
- ☆277Oct 13, 2025Updated 5 months ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆21Feb 20, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆101Feb 26, 2025Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆22Jul 18, 2024Updated last year
- Spatially resolved transcriptomic analysis☆65Nov 17, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆208Feb 4, 2026Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆120Jan 30, 2023Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆28Nov 21, 2019Updated 6 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆165Mar 16, 2026Updated 3 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Jan 22, 2026Updated 2 months ago
- Spatial omics analysis toolbox☆368Apr 3, 2026Updated last week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆146Mar 20, 2026Updated 3 weeks ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago