raphael-group / STARCHLinks
Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
☆27Updated last year
Alternatives and similar repositories for STARCH
Users that are interested in STARCH are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- ☆31Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆61Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- CAST package☆40Updated 11 months ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆44Updated 8 months ago
- ☆53Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- Spatial Cellular Estimator for Tumors☆58Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆39Updated 8 months ago
- ☆31Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆30Updated 3 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆30Updated 5 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆95Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆32Updated 9 months ago
- ☆23Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆63Updated 2 years ago