Alternatives and similar repositories for STARCH:

Users that are interested in STARCH are comparing it to the libraries listed below

• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated this week
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆52Updated 6 months ago
• whhudson / spatialTCR
  ☆13Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• jbergenstrahle / STUtility
  ☆49Updated 2 years ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆9Updated 6 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• LiHongCSBLab / SOAPy
  ☆26Updated last month
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 2 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆63Updated 2 years ago
• MarcElosua / SPOTlight_deconvolution_analysis
  ☆17Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆63Updated 5 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆28Updated 3 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆25Updated last month
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last week
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 10 months ago
• Banovich-Lab / Spatial_PF
  ☆24Updated last month
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆51Updated 2 weeks ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• TiedemannLab / sciCNV
  Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
  ☆12Updated 3 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆48Updated 2 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆26Updated 6 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆27Updated 4 months ago
• welch-lab / cytosignal
  ☆17Updated this week