Alternatives and similar repositories for congas

Users that are interested in congas are comparing it to the libraries listed below

• cbg-ethz / SCATrEx
  Map single-cell transcriptomes to copy number evolutionary trees.
  ☆14Updated last year
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 6 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• leeprichman / ClonoCluster
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 6 months ago
• tabdelaal / SIRV
  Spatial RNA velocity
  ☆10Updated last year
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆17Updated last year
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated last year
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆13Updated last year
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆17Updated 6 years ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆19Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆22Updated last year
• aristoteleo / dynast-release
  Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
  ☆19Updated 3 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆22Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆14Updated 5 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• theislab / greatpy
  GREAT algorithm in Python
  ☆14Updated 3 years ago
• vals / Blog
  ☆37Updated last month