MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
☆51Apr 19, 2024Updated last year
Alternatives and similar repositories for MARVEL
Users that are interested in MARVEL are comparing it to the libraries listed below
Sorting:
- ☆33Jul 14, 2021Updated 4 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated last month
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 5 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 2 weeks ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- ☆35Dec 20, 2023Updated 2 years ago
- Phage Annotation using Protein Structures☆151Feb 9, 2026Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Dec 20, 2024Updated last year
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Virus Identification By iteRative ANnoTation☆186Apr 15, 2024Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- ☆21Nov 17, 2022Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 5 years ago
- Supporting code for uncultivated gut virus manuscript☆77Jul 17, 2023Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆118Feb 10, 2023Updated 3 years ago
- WtP: Phage identification via nextflow and docker or singularity☆104Feb 20, 2026Updated last week
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last week
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Aug 9, 2023Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆16May 22, 2023Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated 9 months ago