MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
☆51Apr 19, 2024Updated 2 years ago
Alternatives and similar repositories for MARVEL
Users that are interested in MARVEL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Jul 14, 2021Updated 5 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Oct 3, 2020Updated 6 years ago
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 6 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 8 months ago
- ☆18Apr 6, 2022Updated 4 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆38Oct 14, 2026Updated 2 weeks ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆43Apr 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 5 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆24Dec 16, 2024Updated last year
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆34Dec 20, 2023Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆108Oct 6, 2026Updated 3 weeks ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆21Nov 6, 2024Updated last year
- Mining CRISPRs in Environmental Datasets☆128Feb 10, 2023Updated 3 years ago
- viralVerify: viral contig verification tool☆79Feb 19, 2026Updated 8 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 5 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆94Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆30Nov 20, 2023Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆301Nov 28, 2024Updated last year
- CASC Ain't Simply CRT☆11Jul 14, 2021Updated 5 years ago