WrightonLabCSU / DRAMLinks
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
☆294Updated this week
Alternatives and similar repositories for DRAM
Users that are interested in DRAM are comparing it to the libraries listed below
Sorting:
- customizable pipeline to identify viral sequences from (meta)genomic data☆266Updated 9 months ago
- Rapid comparison and dereplication of genomes☆310Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆278Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆247Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- An updated pipeline for pangenome investigation☆311Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆258Updated last week
- CarveMe: genome-scale metabolic model reconstruction☆181Updated last week
- Bacterial ribosomal RNA predictor☆254Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆186Updated 2 weeks ago
- antiSMASH☆221Updated 2 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆222Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆227Updated 5 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆166Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆332Updated last week
- A user-friendly workflow for phylogenomics☆219Updated last month
- Eukaryotic Genome Annotation Pipeline☆362Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 3 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆202Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆243Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆247Updated 2 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆213Updated this week
- Similarity networks of biosynthetic gene clusters☆129Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆384Updated 3 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆211Updated last week
- fast phage annotation program☆176Updated this week
- Read alignment statistics for metagenomics☆367Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆349Updated last month