Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
☆326Mar 30, 2026Updated last week
Alternatives and similar repositories for DRAM
Users that are interested in DRAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Mar 24, 2026Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆285Nov 28, 2024Updated last year
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆228Apr 1, 2026Updated last week
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Bioinformatics program inStrain☆183Mar 12, 2026Updated 3 weeks ago
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- Rapid comparison and dereplication of genomes☆333Nov 10, 2025Updated 4 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆297Mar 29, 2026Updated last week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆618Feb 18, 2026Updated last month
- A complete pipeline for metagenomic analysis☆439Mar 11, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆184Mar 31, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- A user-friendly workflow for phylogenomics☆226Feb 5, 2026Updated 2 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- DAS Tool☆170May 2, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆163Feb 13, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated last month
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆246Oct 12, 2025Updated 5 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Toolbox for comparative genomics of MAGs☆88Mar 25, 2026Updated 2 weeks ago
- Systematic search of all known anti-phage systems.☆151Apr 2, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated 3 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 7 months ago