Rapid discovery of novel prophages using biological feature engineering and machine learning
☆39Dec 20, 2024Updated last year
Alternatives and similar repositories for PhageBoost
Users that are interested in PhageBoost are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Dec 6, 2023Updated 2 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆92Dec 2, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Updated this week
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 5 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- a comparative genome browser for bacteriophages☆21Jul 18, 2026Updated last week
- ☆33Jul 14, 2021Updated 5 years ago
- ☆17May 26, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 2 months ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆220Updated this week
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 3 months ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Virus Identification By iteRative ANnoTation☆199Apr 15, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- ☆20Nov 17, 2022Updated 3 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆107Jul 15, 2026Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Oct 14, 2023Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago