Rapid discovery of novel prophages using biological feature engineering and machine learning
☆37Dec 20, 2024Updated last year
Alternatives and similar repositories for PhageBoost
Users that are interested in PhageBoost are comparing it to the libraries listed below
Sorting:
- ☆35Dec 20, 2023Updated 2 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated last month
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- A simple program to classify the lifestyle of phages.☆16May 22, 2023Updated 2 years ago
- fast phage annotation program☆197Feb 1, 2026Updated last month
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- ☆33Jul 14, 2021Updated 4 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆25Oct 21, 2021Updated 4 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- ☆17May 26, 2022Updated 3 years ago
- Prediction of prophages from bacterial genomes☆81Feb 2, 2026Updated last month
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- Virus Identification By iteRative ANnoTation☆186Apr 15, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- ☆21Nov 17, 2022Updated 3 years ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 10 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Jun 4, 2025Updated 9 months ago
- Phage Annotation using Protein Structures☆151Feb 9, 2026Updated 3 weeks ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆68Oct 22, 2024Updated last year
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆282Nov 28, 2024Updated last year