GlobalPathogenAnalysisService / read-it-and-keepLinks
Read contamination removal
☆25Updated last year
Alternatives and similar repositories for read-it-and-keep
Users that are interested in read-it-and-keep are comparing it to the libraries listed below
Sorting:
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Variant call verification☆16Updated last month
- CFSAN Shigella Typing Pipeline☆14Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- ☆14Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 7 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- ☆17Updated last year
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 7 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 11 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- ☆26Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Systematic ProtEin AnnotatoR☆19Updated 8 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago