sanger-tol / PretextMapLinks
Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
☆22Updated last month
Alternatives and similar repositories for PretextMap
Users that are interested in PretextMap are comparing it to the libraries listed below
Sorting:
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 11 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- ☆26Updated last year
- ☆37Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Extracting paths from assembly graphs☆24Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- The MafFilter genome alignment processor☆19Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆21Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆25Updated 3 weeks ago
- SV calling for diploid assemblies☆28Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- ☆36Updated last month
- the pangenome graph evaluator☆28Updated 4 years ago