Alternatives and similar repositories for PretextMap:

Users that are interested in PretextMap are comparing it to the libraries listed below

• mrvollger / NucFreq
  ☆35Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 6 months ago
• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• at-cg / RAFT
  ☆22Updated 7 months ago
• morispi / LRez
  Standalone tool and library allowing to work with barcoded linked-reads
  ☆12Updated 3 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆29Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆23Updated 2 weeks ago
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆16Updated 11 months ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 11 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated 2 years ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 11 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆26Updated last year
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated 6 months ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆22Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago