sanger-tol / PretextMap

Related projects ⓘ

Alternatives and complementary repositories for PretextMap

• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 3 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆23Updated 2 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆31Updated this week
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆26Updated 6 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 3 weeks ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆15Updated 3 weeks ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆23Updated 4 months ago
• at-cg / RAFT
  ☆19Updated 3 months ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 7 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 6 months ago
• rhysf / Diamond2GO
  ☆19Updated 3 months ago
• mrvollger / NucFreq
  ☆32Updated 8 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 5 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆14Updated 4 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated 11 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆23Updated 3 years ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆28Updated 4 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆15Updated 4 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆27Updated last week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated last year
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆11Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆33Updated last month