Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
☆26Mar 27, 2026Updated last month
Alternatives and similar repositories for PretextMap
Users that are interested in PretextMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OpenGL Powered Pretext Contact Map Viewer☆61Apr 27, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated 2 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- ☆17Feb 11, 2026Updated 3 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Jun 9, 2020Updated 5 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- Pipelines for the production of Treeval data☆31May 13, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- ☆18Jan 29, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆13May 27, 2025Updated 11 months ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆30Sep 11, 2021Updated 4 years ago
- Improved Phased Assembler