Xiangyang1984 / GclusterLinks
A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
☆18Updated 3 weeks ago
Alternatives and similar repositories for Gcluster
Users that are interested in Gcluster are comparing it to the libraries listed below
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Prokaryotic Pangenome Analysis☆24Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ☆14Updated 4 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- transposable element typing pipeline☆19Updated last year
- ☆43Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Hierarchical clustering of cgMLST☆12Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Updated 2 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Colinear block visualisation tool☆31Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- MAG Circularization Method☆32Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago