Xiangyang1984 / GclusterLinks
A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
☆16Updated last year
Alternatives and similar repositories for Gcluster
Users that are interested in Gcluster are comparing it to the libraries listed below
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- MAG Circularization Method☆33Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Genomic sequence aligner☆25Updated 2 weeks ago
- Bacterial GWAS analysis☆40Updated last week
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- ☆21Updated 4 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Pan-genome Analysis☆11Updated last month
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 3 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- convert a blast output to a bed file☆12Updated 9 years ago