bcgsc / LongStitchLinks
Correct and scaffold assemblies using long reads
☆54Updated last year
Alternatives and similar repositories for LongStitch
Users that are interested in LongStitch are comparing it to the libraries listed below
Sorting:
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- k-mer learning materials☆70Updated 3 months ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆91Updated 10 months ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆102Updated this week
- Structural Variant Identification Method using Genome Assemblies☆117Updated 2 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- Graph-based assembly phasing☆85Updated last month
- Synteny Imager☆62Updated 9 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆58Updated last week
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆42Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- PacBio BAM toolkit☆43Updated 3 months ago
- Ancient microbiome snakemake workflow☆24Updated last month
- ☆32Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago