bcgsc / LongStitch
Correct and scaffold assemblies using long reads
☆51Updated last year
Alternatives and similar repositories for LongStitch:
Users that are interested in LongStitch are comparing it to the libraries listed below
- ✏️ Genome assembly polishing & SNV detection☆68Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Split k-mer analysis – version 2☆82Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- ☆29Updated last week
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 6 months ago
- Graph-based assembly phasing☆78Updated 5 months ago
- whole genome MLST analysis☆41Updated 3 weeks ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Synteny Imager☆61Updated 8 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 3 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆100Updated last month
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- PacBio BAM toolkit☆43Updated 2 months ago
- k-mer learning materials☆70Updated 2 months ago
- ☆43Updated last week
- A fast tool for hybrid genome assembly of long and short reads☆77Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- ☆61Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year