institut-de-genomique / HAPO-GView external linksLinks
Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
☆26Oct 24, 2025Updated 3 months ago
Alternatives and similar repositories for HAPO-G
Users that are interested in HAPO-G are comparing it to the libraries listed below
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆50Feb 20, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆44Nov 1, 2025Updated 3 months ago
- ☆12Feb 16, 2025Updated last year
- ☆39Feb 22, 2023Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 9 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆211Jan 17, 2024Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 5 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Jan 2, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆164Sep 8, 2024Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 5 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- ☆12Dec 12, 2014Updated 11 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 4 years ago
- Identification of conserved non-coding sequences in plants☆32Feb 4, 2026Updated last week
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Jun 3, 2025Updated 8 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 7 months ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 3 weeks ago