Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
☆26Oct 24, 2025Updated last year
Alternatives and similar repositories for HAPO-G
Users that are interested in HAPO-G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated 2 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 5 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆69Dec 8, 2025Updated 10 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- A mosaic genome painting tool for plant genomes☆19May 6, 2026Updated 6 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 5 years ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- ☆11Feb 12, 2022Updated 4 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆41Apr 12, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- ☆41Feb 22, 2023Updated 3 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 7 months ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- Long Reads Annotation pipeline☆71Mar 31, 2022Updated 4 years ago
- ☆11Feb 16, 2025Updated last year
- haplotypic duplication identification tool☆299Oct 30, 2025Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Library and tools to deal with polyploid genomics☆11May 10, 2021Updated 5 years ago
- ☆45Dec 29, 2025Updated 10 months ago
- ☆10Nov 20, 2025Updated 11 months ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆42Jul 11, 2025Updated last year