Find and visualize rearrangements in DNA sequences
☆55Jun 3, 2026Updated last month
Alternatives and similar repositories for smashpp
Users that are interested in smashpp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- ☆26Jan 26, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Jan 31, 2020Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 2 months ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆18Sep 16, 2021Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- cgat-apps repository☆36Updated this week
- ☆18Jan 29, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated last week
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 5 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆30Aug 1, 2023Updated 2 years ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- Pangenome Mutation-Annotated Networks☆45Jul 14, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 weeks ago
- ☆68Apr 9, 2024Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 9 months ago