smortezah / smashppLinks
Find and visualize rearrangements in DNA sequences
☆55Updated last year
Alternatives and similar repositories for smashpp
Users that are interested in smashpp are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆28Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Population-wide Deletion Calling☆35Updated last month
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- ☆26Updated 6 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆34Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago