Alternatives and similar repositories for telogator

Users that are interested in telogator are comparing it to the libraries listed below

• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆11Updated 8 months ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 5 months ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 3 months ago
• quanc1989 / SV-ONT-Tibetan
  Characterization of Structural Variation in Chinese samples
  ☆18Updated 4 years ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆19Updated 5 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated last year
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆20Updated 3 weeks ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated last week
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• GillesFischerSorbonne / telofinder
  ☆16Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆22Updated 4 months ago
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 5 years ago
• malonge / CallSV
  A long-read SV calling pipeline
  ☆12Updated 4 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year