LankyCyril / edgecaseLinks
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
☆16Updated last year
Alternatives and similar repositories for edgecase
Users that are interested in edgecase are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆25Updated last month
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 3 months ago
- ☆16Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- Convert HAL to VG☆22Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆14Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Genome Assembly 102☆15Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Archived version 1.0.2☆16Updated 5 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago