fmalmeida / MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
☆56Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for MpGAP
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- whole genome MLST analysis☆38Updated 6 months ago
- Precise host read removal☆78Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Gene-flank analysis tool☆26Updated 6 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Recombination-free trees☆56Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆27Updated 4 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆19Updated 7 months ago
- 🔬 🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆17Updated 6 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- catalog for long-read sequencing tools☆32Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Bacterial GWAS analysis☆32Updated last month
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆51Updated this week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆33Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- Find Unique genomic Regions☆29Updated this week
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago