ablab / stringdecomposer
Tool for decomposition centromeric assemblies and long reads into monomers
☆32Updated 2 years ago
Related projects: ⓘ
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆28Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Convert HAL to VG☆21Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- FastK based version of Merqury☆18Updated last week
- A Hi-C scaffolding method☆21Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆22Updated 2 months ago
- ☆17Updated 3 weeks ago
- SV calling for diploid assemblies☆23Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆26Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 3 months ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆44Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated 9 months ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 4 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 8 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated last year
- Improved Phased Assembler☆27Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆23Updated last month
- ☆14Updated 3 years ago