ablab / stringdecomposerLinks
Tool for decomposition centromeric assemblies and long reads into monomers
☆36Updated 2 years ago
Alternatives and similar repositories for stringdecomposer
Users that are interested in stringdecomposer are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last month
- ☆31Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆37Updated last year
- SV calling for diploid assemblies☆28Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- ☆17Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆21Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- ☆36Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆36Updated last week
- Convert HAL to VG☆22Updated 11 months ago
- Phasing reads with secondary alignments☆19Updated 8 months ago