Tool for decomposition centromeric assemblies and long reads into monomers
☆37Sep 17, 2022Updated 3 years ago
Alternatives and similar repositories for stringdecomposer
Users that are interested in stringdecomposer are comparing it to the libraries listed below
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 4 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Genome Pair Rapid Dotter☆67Sep 2, 2021Updated 4 years ago
- ☆186Feb 10, 2026Updated last month
- ☆16Apr 9, 2021Updated 4 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆42May 19, 2025Updated 10 months ago
- ☆15Aug 22, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆38Dec 29, 2025Updated 2 months ago
- A program for assessing the T2T genome continuity☆92Feb 28, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- A complete diploid human genome☆145Mar 9, 2026Updated last week
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated 2 weeks ago
- ☆62Sep 15, 2025Updated 6 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- RepeatIdentifier☆72Mar 19, 2025Updated last year
- ☆38Oct 6, 2025Updated 5 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago