YaoZhou89 / TGGLinks
tomato graph pangenome
☆86Updated 3 years ago
Alternatives and similar repositories for TGG
Users that are interested in TGG are comparing it to the libraries listed below
Sorting:
- Application of pan-genome for population☆116Updated 2 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆87Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆102Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- ☆86Updated last year
- NLR-Annotator upload☆76Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆132Updated 3 years ago
- High-precision TE Annotator☆146Updated last month
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Updated 2 months ago
- Genomic related tools☆75Updated 4 years ago
- source code for EVM☆121Updated last year
- A novel genome assembly pipeline based on deep learning☆67Updated last year
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- Collection of tools for the analysis of CpG data☆103Updated 6 months ago
- Genome annotation pipeline☆65Updated last year
- ☆77Updated 6 years ago
- Neural network classification of TE☆97Updated 3 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Updated this week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated 3 weeks ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆133Updated this week
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month
- Useful bioinformatic scripts☆59Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated last week
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 5 months ago
- A program for assessing the T2T genome continuity☆92Updated last month
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 weeks ago