YaoZhou89 / TGG
tomato graph pangenome
☆79Updated 2 years ago
Alternatives and similar repositories for TGG:
Users that are interested in TGG are comparing it to the libraries listed below
- High-precision TE Annotator☆92Updated this week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- Application of pan-genome for population☆102Updated 4 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆77Updated last month
- Structural Variant Identification Method using Genome Assemblies☆100Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆118Updated 2 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆86Updated 3 months ago
- ☆73Updated 7 months ago
- Mapping pipeline for data generated using Arima-HiC☆75Updated 8 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- Genomic related tools☆71Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 6 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆95Updated 4 years ago
- DNA序列比对结果 可视化展示工具☆45Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆96Updated 10 months ago
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- ☆58Updated last year
- A organelle de novo genome assembly toolkit☆54Updated 2 months ago
- Pangenome-based genome inference☆122Updated this week
- Yet another Hi-C scaffolding tool☆140Updated 3 months ago
- source code for EVM☆106Updated 2 months ago
- Neural network classification of TE☆87Updated 2 years ago
- NLR-Annotator upload☆63Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- Constructing a pangenome gene graph☆181Updated 7 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- A novel genome assembly pipeline based on deep learning☆60Updated 2 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆68Updated 2 weeks ago