Alternatives and similar repositories for TGG

Users that are interested in TGG are comparing it to the libraries listed below

• starskyzheng / panpop
  Application of pan-genome for population
  ☆115Updated 3 weeks ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆86Updated 10 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆96Updated last month
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆137Updated 3 weeks ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated this week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆73Updated 2 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• chenlianfu / geta
  ☆83Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆56Updated 2 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆128Updated 3 years ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆65Updated 3 weeks ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆53Updated 5 years ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆106Updated this week
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆102Updated last month
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆70Updated 8 months ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆34Updated 2 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆89Updated last month
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆127Updated this week
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆63Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 11 months ago
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆72Updated 4 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 11 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆110Updated 3 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆66Updated 11 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆142Updated 2 weeks ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week