tomato graph pangenome
☆89Dec 13, 2022Updated 3 years ago
Alternatives and similar repositories for TGG
Users that are interested in TGG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆68Oct 23, 2025Updated 5 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆17Nov 26, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Apr 3, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Figures for the CHM13 T2T SD paper.☆11Sep 12, 2021Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 7 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- ☆28Oct 20, 2023Updated 2 years ago
- ☆29Apr 16, 2023Updated 3 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- ☆21Dec 13, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆91Jan 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Sep 4, 2024Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Pangenome-based genome inference☆165Dec 1, 2025Updated 4 months ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 7 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆44May 8, 2024Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- ☆11Sep 1, 2022Updated 3 years ago
- ☆29Aug 7, 2025Updated 8 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆671Apr 3, 2026Updated last week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month