YaoZhou89 / TGGLinks
tomato graph pangenome
☆84Updated 2 years ago
Alternatives and similar repositories for TGG
Users that are interested in TGG are comparing it to the libraries listed below
Sorting:
- Application of pan-genome for population☆108Updated 10 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆83Updated 7 months ago
- High-precision TE Annotator☆124Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- ☆82Updated last year
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆99Updated 6 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆106Updated last month
- Collection of tools for the analysis of CpG data☆91Updated last month
- Neural network classification of TE☆94Updated 2 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- source code for EVM☆116Updated 9 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆95Updated last week
- A program for assessing the T2T genome continuity☆83Updated last week
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- A novel genome assembly pipeline based on deep learning☆64Updated 8 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Useful bioinformatic scripts☆58Updated 9 months ago
- Phased assembly variant caller☆125Updated 8 months ago
- Genomic related tools☆71Updated 3 years ago
- Genome annotation pipeline☆60Updated last year