JiaoLab2021 / SynDivLinks
A tool for quick and accurate calculation of syntenic diversity.
☆42Updated 4 months ago
Alternatives and similar repositories for SynDiv
Users that are interested in SynDiv are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- ☆21Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆29Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- ☆44Updated 6 months ago
- ☆31Updated 10 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- Automated pipeline for running CoalHMM☆13Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- Multi-genome synteny block visualization tool☆52Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 11 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆38Updated this week
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆33Updated 10 months ago
- ☆44Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- ☆45Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆26Updated last week
- ☆41Updated 2 years ago
- ☆29Updated 3 years ago