JiaoLab2021 / SynDivLinks
A tool for quick and accurate calculation of syntenic diversity.
☆41Updated 5 months ago
Alternatives and similar repositories for SynDiv
Users that are interested in SynDiv are comparing it to the libraries listed below
Sorting:
- ☆21Updated 11 months ago
- ☆30Updated 6 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆30Updated last month
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆34Updated 10 months ago
- ☆41Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- ☆27Updated 3 months ago
- ☆25Updated 3 years ago
- ☆24Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- ☆28Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- ☆40Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- ☆36Updated last week
- ☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- ☆12Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago