JiaoLab2021 / SynDivLinks
A tool for quick and accurate calculation of syntenic diversity.
☆42Updated 2 months ago
Alternatives and similar repositories for SynDiv
Users that are interested in SynDiv are comparing it to the libraries listed below
Sorting:
- ☆31Updated 11 months ago
- ☆21Updated last year
- ☆29Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- ☆30Updated 8 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆40Updated 4 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 9 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- ☆45Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- ☆28Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- ☆41Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- ☆43Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆75Updated 2 weeks ago
- ☆38Updated 2 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆31Updated 6 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago