Alternatives and similar repositories for EVG:

Users that are interested in EVG are comparing it to the libraries listed below

• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆34Updated last month
• baozg / phased-assembly-check
  ☆29Updated last month
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆37Updated 5 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 9 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 6 months ago
• ShiuLab / PseudogenePipeline
  ☆38Updated last year
• simon19891216 / CentIER
  ☆28Updated 5 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆14Updated 2 weeks ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆46Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆25Updated last month
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 6 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆12Updated last year
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆30Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆38Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated 9 months ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆35Updated 2 weeks ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆24Updated 3 weeks ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆25Updated 6 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆27Updated last month