A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
☆49Sep 22, 2025Updated 8 months ago
Alternatives and similar repositories for EVG
Users that are interested in EVG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆46Sep 22, 2025Updated 8 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆43Sep 22, 2025Updated 8 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆40Jun 3, 2025Updated last year
- ☆32Apr 7, 2025Updated last year
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆22Aug 8, 2024Updated last year
- Application of pan-genome for population☆121Oct 26, 2025Updated 7 months ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆23Jul 29, 2025Updated 10 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last month
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆270Jan 5, 2026Updated 5 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- ☆34Mar 19, 2025Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆72Updated this week
- An ultra-fast and efficient genomic tool for coverage calculation☆172Feb 9, 2026Updated 4 months ago
- Pangenome-based genome inference☆170Jun 2, 2026Updated last week
- ☆15Jan 19, 2022Updated 4 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- tomato graph pangenome☆93Dec 13, 2022Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- ☆45Dec 11, 2025Updated 5 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆55Mar 7, 2025Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 3 months ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- ☆43Jan 19, 2024Updated 2 years ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆260Updated this week
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago