JiaoLab2021 / EVGLinks
A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
☆48Updated 2 months ago
Alternatives and similar repositories for EVG
Users that are interested in EVG are comparing it to the libraries listed below
Sorting:
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆43Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆41Updated 4 months ago
- HiCAT new project☆29Updated 6 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆76Updated 3 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- a Semi-automated pipeline for assembling T2T genome☆24Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆50Updated 7 months ago
- ☆41Updated 2 years ago
- ☆21Updated last year
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 9 months ago
- ☆26Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- ☆31Updated 11 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 months ago
- A organelle de novo genome assembly toolkit☆71Updated 9 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 6 months ago
- ☆45Updated 3 years ago
- ☆32Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- An efficient assembly tool for plant mitochondrial genome☆65Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago