JiaoLab2021 / EVG
A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
☆36Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for EVG
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- ☆28Updated 2 months ago
- ☆20Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- High-precision TE Annotator☆58Updated this week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- A genome assembly assessment pipeline.☆36Updated 11 months ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆51Updated last month
- ☆36Updated last year
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆21Updated 2 months ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- ☆21Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 8 months ago
- ☆28Updated 2 years ago
- ☆69Updated last month
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆34Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆41Updated 6 months ago
- ☆40Updated 6 months ago
- ☆39Updated 2 years ago
- ☆42Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated last month
- Computational Analysis of Gene Expression Evolution☆36Updated last week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆16Updated 4 months ago