A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
☆52Sep 22, 2025Updated last year
Alternatives and similar repositories for EVG
Users that are interested in EVG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆49Sep 22, 2025Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated last year
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆30Jul 29, 2025Updated last year
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆23Apr 13, 2026Updated 5 months ago
- ☆33Apr 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- ☆23Aug 8, 2024Updated 2 years ago
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 11 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 11 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆113Jul 23, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- ☆36Jun 24, 2026Updated 3 months ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 4 months ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- High-precision TE Annotator☆165Dec 4, 2025Updated 10 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 4 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆43Jun 3, 2025Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 4 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- tomato graph pangenome☆95Dec 13, 2022Updated 3 years ago
- ☆15May 3, 2023Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Mosaic Genome Assembler☆29Sep 14, 2026Updated 3 weeks ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 6 months ago
- ☆45Dec 11, 2025Updated 10 months ago
- ☆52Jun 27, 2026Updated 3 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- ☆43Jan 19, 2024Updated 2 years ago