starskyzheng / panpopLinks
Application of pan-genome for population
☆108Updated 10 months ago
Alternatives and similar repositories for panpop
Users that are interested in panpop are comparing it to the libraries listed below
Sorting:
- tomato graph pangenome☆84Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- High-precision TE Annotator☆124Updated 2 months ago
- Collection of tools for the analysis of CpG data☆91Updated last month
- A program for assessing the T2T genome continuity☆83Updated last week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- source code for EVM☆116Updated 9 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- Phased assembly variant caller☆125Updated 8 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 5 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated last month
- NLR-Annotator upload☆71Updated 2 years ago
- PacBio BAM toolkit☆46Updated 6 months ago
- ☆44Updated 8 years ago
- Neural network classification of TE☆94Updated 2 months ago
- Pangenome-based genome inference☆139Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- Genomic related tools☆71Updated 3 years ago