yilinZhang-bio / Watermelon-pangenomeLinks
☆22Updated last year
Alternatives and similar repositories for Watermelon-pangenome
Users that are interested in Watermelon-pangenome are comparing it to the libraries listed below
Sorting:
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Whole Genome Annotation Pipeline☆17Updated 3 weeks ago
- ☆25Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆27Updated 3 months ago
- ☆14Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 weeks ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- ☆30Updated 6 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆22Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆28Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- ☆16Updated 6 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago