yilinZhang-bio / Watermelon-pangenome

Related projects ⓘ

Alternatives and complementary repositories for Watermelon-pangenome

• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆22Updated 3 years ago
• tangerzhang / calc_switchErr
  ☆24Updated 2 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated 7 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated this week
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆15Updated 6 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆21Updated last year
• simon19891216 / CentIER
  ☆21Updated 2 months ago
• LAILAB-CAU / update-Mo17
  ☆21Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆23Updated 2 years ago
• JM-SONG / GenomeSyn
  ☆21Updated 2 years ago
• lardo / khaper
  ☆28Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆36Updated 11 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆14Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated last month
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 3 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆27Updated last year
• baduelp / public
  ☆16Updated last month
• hewm2008 / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
  ☆27Updated last month
• yanyew / SynGAP
  ☆29Updated 2 months ago
• jkimlab / DESCHRAMBLER
  ☆20Updated 8 months ago
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated 8 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆37Updated 3 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆12Updated 3 months ago
• baozg / phased-assembly-check
  ☆28Updated 2 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆16Updated 4 months ago
• YaoZhou89 / WGSc
  ☆16Updated 2 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year