Alternatives and similar repositories for Watermelon-pangenome

Users that are interested in Watermelon-pangenome are comparing it to the libraries listed below

• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 5 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆17Updated last month
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• simon19891216 / CentIER
  ☆33Updated 9 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated 10 months ago
• lardo / khaper
  ☆28Updated 2 years ago
• baozg / phased-assembly-check
  ☆30Updated 5 months ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆40Updated 2 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• NotebookOFXiaoMing / SuperPangenomeofGrapevines
  ☆14Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• likui345 / PGA
  ☆15Updated 3 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated last year
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• panlab-bioinfo / Gap-Aid
  ☆12Updated last month
• sudmantlab / amylase_diversity_project
  ☆16Updated 6 months ago
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆18Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 7 months ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 6 months ago