yilinZhang-bio / Watermelon-pangenomeLinks
☆27Updated 2 years ago
Alternatives and similar repositories for Watermelon-pangenome
Users that are interested in Watermelon-pangenome are comparing it to the libraries listed below
Sorting:
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- Study of TE evolution in a population of genomes☆10Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 5 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆16Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- ☆29Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- ☆29Updated 2 years ago
- ☆31Updated 9 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Whole Genome Annotation Pipeline☆16Updated 7 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- ☆32Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- ☆10Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- The IntroBlocker ancestry inference algorithm☆17Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆16Updated 2 years ago