Alternatives and similar repositories for Data-Analysis-for-SDs-in-T2T-CHM13

Users that are interested in Data-Analysis-for-SDs-in-T2T-CHM13 are comparing it to the libraries listed below

• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• Minglc / CisTrans-ECAS
  ☆11Updated this week
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆19Updated 6 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆27Updated 3 months ago
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated 6 months ago
• xuechantian / Plant-LncRNA-pipline
  ☆15Updated 9 months ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆22Updated last year
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 7 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• wk8910 / assemble_pipeline
  Assemble and following pipeline used in wisent genome paper.
  ☆17Updated 8 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated last year
• caasivfbioinfo / Bol_pangenome
  ☆16Updated 2 years ago
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 4 years ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 6 months ago
• Chenghong412 / sheep_introgression
  ☆11Updated 3 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• BovReg / BovReg_eQTL
  Repository
  ☆10Updated last year
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆10Updated 2 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 5 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago