mrvollger / Data-Analysis-for-SDs-in-T2T-CHM13
Figures for the CHM13 T2T SD paper.
☆9Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Data-Analysis-for-SDs-in-T2T-CHM13
- Long Read Based SV Calling Tools Analysis☆11Updated 7 months ago
- Set of script for the paper on the cattle graph genome☆13Updated last year
- issues for semina "Data Visulization"☆12Updated last year
- Some useful bioinformatics pipelines for genomics analysis☆14Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆21Updated 10 months ago
- ☆22Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆11Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- ☆11Updated 4 months ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆16Updated 5 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated last year
- ☆14Updated 11 months ago
- Killifish genomics scripts☆12Updated 3 years ago
- plot genome alignment synteny☆19Updated 4 years ago
- This is the Haplotypo repository☆20Updated 5 months ago
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆16Updated 2 years ago
- ☆15Updated 3 years ago
- Pooled Sequencing Analysis for Sex Signal☆10Updated 3 years ago
- ☆14Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated last month
- ☆32Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆13Updated 11 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆15Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 3 months ago