vgteam / giraffe-sv-paper
☆41Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for giraffe-sv-paper
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆28Updated 2 months ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- ☆33Updated 8 months ago
- ☆23Updated 2 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- ☆31Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year
- ☆32Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆34Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆36Updated last year
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- ☆28Updated 2 years ago
- ☆21Updated 2 years ago
- ☆36Updated last year
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- ☆24Updated 3 years ago
- ☆20Updated 3 months ago
- HiCAT new project☆27Updated last year
- Fast and frugal disk based k-mer counter☆13Updated 3 years ago
- ☆30Updated 2 weeks ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago