LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
☆220Jul 5, 2025Updated 11 months ago
Alternatives and similar repositories for LDBlockShow
Users that are interested in LDBlockShow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 11 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆106Jun 20, 2026Updated 2 weeks ago
- 📊 Circular and Rectangular Manhattan Plot☆642May 8, 2026Updated last month
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆113May 23, 2026Updated last month
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆328May 27, 2026Updated last month
- A haplotype analysis toolkit for natural variation study.☆34Oct 3, 2023Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- Genome Association Predict Integrate Tools☆236May 21, 2026Updated last month
- BamDeal: a comprehensive toolkit for bam manipulation☆55Dec 21, 2022Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆156Jun 16, 2026Updated 2 weeks ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆18Feb 15, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated last month
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆83Jun 25, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- Application of pan-genome for population☆121Oct 26, 2025Updated 8 months ago
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated 2 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆272Jun 22, 2026Updated last week
- A library for running k-mers based GWAS☆128Oct 29, 2024Updated last year
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated last month
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- General tools for genomic analyses.☆391Mar 25, 2026Updated 3 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- High-precision TE Annotator☆160Dec 4, 2025Updated 7 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆175Apr 17, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 10 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆92Jan 14, 2025Updated last year
- ☆23Mar 27, 2026Updated 3 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆230Jul 4, 2025Updated last year
- ☆16Oct 9, 2024Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆919Jun 21, 2026Updated last week