BGI-shenzhen / LDBlockShowLinks
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
☆192Updated 4 months ago
Alternatives and similar repositories for LDBlockShow
Users that are interested in LDBlockShow are comparing it to the libraries listed below
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆200Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆162Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- A library for running k-mers based GWAS☆119Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆209Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- PASA software☆194Updated 9 months ago
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated last month
- Jasmine: SV Merging Across Samples☆231Updated 11 months ago
- De-Novo Repeat Discovery Tool☆223Updated 3 months ago
- 整理常用的群体遗传学分析流程和脚本☆115Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆61Updated 9 months ago
- a lightweight bam file depth statistical tool☆157Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Low Coverage Calling of Genotypes☆162Updated this week
- Read trimming tool for Illumina NGS data.☆147Updated 10 years ago
- Haplotype based scans for selection☆136Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆224Updated 9 months ago