LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
☆230Jul 5, 2025Updated last year
Alternatives and similar repositories for LDBlockShow
Users that are interested in LDBlockShow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆39Jul 5, 2025Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆175Sep 15, 2026Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆277Oct 17, 2026Updated 2 weeks ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆112Jun 20, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A haplotype analysis toolkit for natural variation study.☆36Oct 3, 2023Updated 3 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆342May 27, 2026Updated 5 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- 📊 Circular and Rectangular Manhattan Plot☆648May 8, 2026Updated 5 months ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- tomato graph pangenome☆95Dec 13, 2022Updated 3 years ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆148Sep 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆183Apr 17, 2026Updated 6 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆61Jun 20, 2026Updated 4 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆252Sep 6, 2024Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- A library for running k-mers based GWAS☆131Oct 29, 2024Updated 2 years ago
- Application of pan-genome for population☆123Oct 26, 2025Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated 3 months ago
- Genome Association Predict Integrate Tools☆247Updated this week
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆97Jan 14, 2025Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆203Aug 17, 2026Updated 2 months ago
- ☆83Jun 2, 2023Updated 3 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆55Dec 21, 2022Updated 3 years ago
- General tools for genomic analyses.☆399Mar 25, 2026Updated 7 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆194Jul 21, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- High-precision TE Annotator☆168Dec 4, 2025Updated 10 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Evaluating genome assemblies☆129Oct 21, 2026Updated last week
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆232Oct 14, 2026Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆935Updated this week
- ☆19Feb 15, 2024Updated 2 years ago