LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
☆226Jul 5, 2025Updated last year
Alternatives and similar repositories for LDBlockShow
Users that are interested in LDBlockShow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆210Jul 16, 2026Updated last month
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆37Jul 5, 2025Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆109Jun 20, 2026Updated 2 months ago
- 📊 Circular and Rectangular Manhattan Plot☆646May 8, 2026Updated 3 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆114May 23, 2026Updated 3 months ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆337May 27, 2026Updated 3 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- A haplotype analysis toolkit for natural variation study.☆36Oct 3, 2023Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆55Dec 21, 2022Updated 3 years ago
- Genome Association Predict Integrate Tools☆240Aug 21, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆182Jun 23, 2026Updated 2 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆168Jun 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated last month
- ☆19Feb 15, 2024Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆44May 23, 2026Updated 3 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆60Jun 20, 2026Updated 2 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆279Aug 10, 2026Updated 3 weeks ago
- A library for running k-mers based GWAS☆129Oct 29, 2024Updated last year
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Application of pan-genome for population☆121Oct 26, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- General tools for genomic analyses.☆394Mar 25, 2026Updated 5 months ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Jul 16, 2026Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 4 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆95Jan 14, 2025Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 5 months ago
- ☆16Oct 9, 2024Updated last year
- High-precision TE Annotator☆163Dec 4, 2025Updated 8 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆928Aug 12, 2026Updated 3 weeks ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year