Alternatives and similar repositories for LDBlockShow:

Users that are interested in LDBlockShow are comparing it to the libraries listed below

• BGI-shenzhen / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆189Updated 8 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆210Updated last week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆199Updated 3 weeks ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆180Updated 2 weeks ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• PASApipeline / PASApipeline
  PASA software
  ☆186Updated 2 months ago
• SunPengChuan / wgdi
  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
  ☆135Updated 3 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆108Updated 5 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆146Updated 3 weeks ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆222Updated 3 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆176Updated 6 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆249Updated last week
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆179Updated 3 weeks ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆131Updated 2 months ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆209Updated 3 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆215Updated 9 months ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆89Updated 2 weeks ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆95Updated 2 years ago
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆70Updated 3 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆253Updated 4 months ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆89Updated 5 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 4 years ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆266Updated 2 months ago
• chenlianfu / geta
  ☆78Updated 9 months ago
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆183Updated this week
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆236Updated last year
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆163Updated last year