HongboDoll / TomatoSuperPanGenomeLinks
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
☆61Updated last year
Alternatives and similar repositories for TomatoSuperPanGenome
Users that are interested in TomatoSuperPanGenome are comparing it to the libraries listed below
Sorting:
- Genome annotation pipeline☆62Updated last year
- DNA序列比对结果 可视化展示工具☆55Updated 2 years ago
- Useful bioinformatic scripts☆58Updated 10 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆96Updated 2 weeks ago
- tomato graph pangenome☆84Updated 2 years ago
- ☆82Updated last year
- NLR-Annotator upload☆72Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 3 weeks ago
- ☆14Updated 5 years ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆19Updated 5 months ago
- A novel genome assembly pipeline based on deep learning☆65Updated 10 months ago
- Genomic related tools☆71Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 2 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆84Updated 8 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆42Updated 2 weeks ago
- A parallel wrapper for LTR_FINDER☆54Updated 6 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆96Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 4 months ago
- ☆15Updated 5 years ago
- ☆74Updated 5 years ago
- A collection of tools for Genome Assembly analysis☆20Updated last year
- A program to call variants from genome alignment☆81Updated 5 months ago
- Neural network classification of TE☆96Updated 4 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month