HongboDoll / TomatoSuperPanGenome
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
☆47Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for TomatoSuperPanGenome
- Genome annotation pipeline☆53Updated 4 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆81Updated 4 months ago
- ☆13Updated 4 years ago
- ☆70Updated 4 months ago
- DNA序列比对结果 可视化展示工具☆43Updated last year
- Genomic related tools☆70Updated 3 years ago
- Useful bioinformatic scripts☆53Updated 9 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆25Updated last year
- MutMap pipeline to identify causative mutations responsible for a phenotype☆50Updated last month
- NLR-Annotator upload☆60Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Graph-based Sequence Assembly Toolkit☆20Updated 6 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 3 weeks ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆61Updated 6 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆22Updated 3 weeks ago
- A novel genome assembly pipeline based on deep learning☆53Updated last month
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- ☆41Updated 10 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆81Updated 2 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆26Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- tomato graph pangenome☆73Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆35Updated 4 months ago
- Some bioinformic domestic scripts.☆34Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆93Updated 4 years ago
- Toolkits Integrated for Genetic and Evolutionary Research☆15Updated 8 months ago
- High-precision TE Annotator☆65Updated last week
- paml documentation and tutorials☆47Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago