HuffordLab / NAM-genomesLinks
Detailed bioinformatics scripts and methods used in the NAM genome paper.
☆81Updated 5 months ago
Alternatives and similar repositories for NAM-genomes
Users that are interested in NAM-genomes are comparing it to the libraries listed below
Sorting:
- tomato graph pangenome☆83Updated 2 years ago
- Application of pan-genome for population☆106Updated 8 months ago
- High-precision TE Annotator☆119Updated 2 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆139Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆97Updated 4 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆134Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- ☆88Updated 3 years ago
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆102Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated 11 months ago
- Constructing a pangenome gene graph☆191Updated 3 weeks ago
- ☆79Updated 11 months ago
- Phased assembly variant caller☆120Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- NLR-Annotator upload☆68Updated last year
- Pangenome-based genome inference☆129Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- ☆63Updated 2 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆74Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆130Updated 2 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆129Updated 8 months ago
- Genomic related tools☆71Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆92Updated 7 months ago
- source code for EVM☆112Updated 6 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago