pan-sol / pan-sol-pipelinesView external linksLinks
☆10Sep 4, 2024Updated last year
Alternatives and similar repositories for pan-sol-pipelines
Users that are interested in pan-sol-pipelines are comparing it to the libraries listed below
Sorting:
- ☆17Nov 26, 2023Updated 2 years ago
- ☆27Oct 20, 2023Updated 2 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19May 17, 2023Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Jun 14, 2024Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- ☆29Apr 16, 2023Updated 2 years ago
- ☆21May 31, 2024Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Oct 23, 2025Updated 3 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 5 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆11May 26, 2025Updated 8 months ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 3 months ago
- ☆33Feb 1, 2026Updated last week
- tomato graph pangenome☆87Dec 13, 2022Updated 3 years ago
- Genome Assembly 102☆17Apr 23, 2025Updated 9 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Dec 6, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 7 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- ☆16Jul 29, 2023Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 6 years ago
- ☆14Feb 22, 2022Updated 3 years ago
- Methylation analysis pipeline for genome graph☆14May 25, 2025Updated 8 months ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆25Aug 17, 2024Updated last year
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Analyse RNA feature distributions.☆18Dec 16, 2024Updated last year
- Regenotyping structural variants through an accurate and efficient force-calling method☆22Nov 28, 2025Updated 2 months ago
- ☆16Mar 17, 2023Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- ☆20Sep 6, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆25Apr 17, 2025Updated 9 months ago