☆11Sep 4, 2024Updated last year
Alternatives and similar repositories for pan-sol-pipelines
Users that are interested in pan-sol-pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Nov 26, 2023Updated 2 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆20May 17, 2023Updated 2 years ago
- ☆28Oct 20, 2023Updated 2 years ago
- ☆29Apr 16, 2023Updated 3 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆21May 31, 2024Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆68Oct 23, 2025Updated 5 months ago
- ☆15Feb 22, 2022Updated 4 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 6 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- a broadly applicable tool for automated gene identification and retrieval☆41Mar 26, 2026Updated 3 weeks ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- tomato graph pangenome☆89Dec 13, 2022Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- ☆36Apr 8, 2026Updated last week
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆26Oct 16, 2025Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- Teaching modules for Human Genome Variation Lab.☆21Jun 6, 2025Updated 10 months ago
- ☆21Apr 15, 2024Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆26Apr 17, 2025Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 10 months ago