jonassibbesen / vgrna-project-paperLinks
Bash scripts and data used in pantranscriptomic paper
☆22Updated 2 years ago
Alternatives and similar repositories for vgrna-project-paper
Users that are interested in vgrna-project-paper are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆24Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated this week
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆15Updated 10 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- ☆23Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- chloroplast genome assembly using long reads data☆12Updated 2 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Updated 6 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- A long-read SV calling pipeline☆12Updated 3 years ago
- ☆15Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- Identification of conserved non-coding sequences in plants☆17Updated last month
- ☆12Updated last year
- ☆27Updated 5 months ago
- Invertory of TE-gene isoforms☆11Updated last year
- ☆11Updated 2 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆10Updated 4 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆30Updated 9 months ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago