jonassibbesen / vgrna-project-paperLinks
Bash scripts and data used in pantranscriptomic paper
☆24Updated 3 years ago
Alternatives and similar repositories for vgrna-project-paper
Users that are interested in vgrna-project-paper are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Identification of conserved non-coding sequences in plants☆29Updated 2 weeks ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Updated 11 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- ☆12Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- conserved non-coding sequence☆14Updated 3 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- ☆15Updated 3 years ago
- several scripts for bioinformatics☆23Updated this week
- ☆15Updated 2 years ago
- ☆16Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated 3 weeks ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆19Updated this week
- ☆16Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆14Updated 8 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago