gcremers / metascanView external linksLinks
Metabolic scanning and annotation of Metagenomes
☆10Dec 18, 2025Updated last month
Alternatives and similar repositories for metascan
Users that are interested in metascan are comparing it to the libraries listed below
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- metabolic heatmap☆22May 12, 2019Updated 6 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated last month
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated 11 months ago
- GEne Cluster prediction with COnditional random fields.☆79Jan 24, 2026Updated 3 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 2 months ago
- ☆12Dec 4, 2025Updated 2 months ago
- R package for computing alpha and beta contributional diversity metrics☆10May 5, 2023Updated 2 years ago
- ☆10Nov 24, 2025Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 3 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated 11 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆11Aug 30, 2023Updated 2 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Oct 19, 2020Updated 5 years ago
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Oct 10, 2023Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated 3 weeks ago
- Precise host read removal☆115Sep 4, 2025Updated 5 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆16Jan 24, 2025Updated last year
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- ☆14Oct 29, 2024Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- ☆19Nov 11, 2024Updated last year
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated last week
- Convert GTDB taxonomy to NCBI taxdump format☆74Aug 24, 2023Updated 2 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Sep 3, 2024Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Feb 9, 2026Updated last week
- Efficient calculation of phylogenetic distance matrices.☆49Oct 8, 2024Updated last year