Alternatives and similar repositories for metascan

Users that are interested in metascan are comparing it to the libraries listed below

• Arkadiy-Garber / MagicLamp
  A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
  ☆14Updated last year
• michaelkyu / MobMess
  ☆21Updated 3 years ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated last year
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated last year
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• lauriebelch / SOCfinder
  ☆16Updated 4 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 8 months ago
• dgittins / CANT-HYD-HydrocarbonBiodegradation
  Hydrocarbon biodegradation gene annotation
  ☆18Updated 3 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆15Updated 5 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated last year
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated this week
• djw533 / hamburger
  HMmer Based UndeRstandinG of gene clustERs
  ☆15Updated 4 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆38Updated 3 years ago
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆11Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 5 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆17Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 3 years ago
• wbazant / CORRAL
  ☆13Updated last year
• valflanza / accnet
  ☆13Updated 8 years ago
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆27Updated 5 months ago
• Russel88 / MAGinator
  MAGinator - Accurate SNV calling and profiling of MAGs
  ☆24Updated 4 months ago
• aweimann / traitar
  ☆23Updated 2 years ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆16Updated 2 months ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆20Updated last month
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆37Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆42Updated 6 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆43Updated 2 months ago